PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G031800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 207aa    MW: 23002.1 Da    PI: 7.059
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G031800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.23.3e-3914112198
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkCa+dC++apyf++eq + +fa++hk+FGasn++k+l+++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq++ l+
  Aqcoe5G031800.1.p  14 PCGACKFLRRKCASDCIFAPYFCSEQgSTQFAAIHKVFGASNISKMLSQIPVSDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAFLQ 105
                        7*************************88**************************************************************** PP

             DUF260  92 aelallk 98 
                        ++l ++k
  Aqcoe5G031800.1.p 106 TQLMQVK 112
                        **98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.89513115IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-3814111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MATTSTGSSS TGSPCGACKF LRRKCASDCI FAPYFCSEQG STQFAAIHKV FGASNISKML  60
SQIPVSDRCE AVVTIAYEAQ ARIRDPVYGC VAHIFALQQQ VAFLQTQLMQ VKVHMANNLV  120
DSRAFQNHWR DNMVEEGLQH MSYPTHMQSI SPQSSIDSVD NNSTDMMEFQ NVQANDDYQF  180
QTCSKKRMSQ SDLGELQALA LRMMRN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007050346.14e-98Lateral organ boundaries-domain 16
SwissprotQ9SLB73e-74LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A061DWW24e-98A0A061DWW2_THECC; Lateral organ boundaries-domain 16
STRINGVIT_07s0005g03030.t012e-93(Vitis vinifera)
STRINGPOPTR_0002s04210.12e-93(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.17e-72lateral organ boundaries-domain 16